Edit User Strain

MIRU-VNTR / Spoligo   Regions of Difference / SNP / Susceptibility  

Strain Information

ID:Species:
Lineage:Country of isolation:
User Data 1: User Data 2: User Data 3:

MIRU:

154 /
MIRU02		   424 /
Mtub04		   577 /
ETRC		   580 /
MIRU04		   802 /
MIRU40		   960 /
MIRU10
1644 /
MIRU16		   1955 /
Mtub21		   2059 /
MIRU20		   2163b /
QUB11b		   2165 /
ETRA		   2347 /
Mtub29
2401 /
Mtub30		   2461 /
ETRB		   2531 /
MIRU23		   2687 /
MIRU24		   2996 /
MIRU26		   3007 /
MIRU27
3171 /
Mtub34		   3192 /
MIRU31		   3690 /
Mtub39		   4052 /
QUB26		   4156 /
QUB4156		   4348 /
MIRU39
Enter MIRU-VNTR data in the following notation:
  • Copy number: numerical 0-9, 10, 11, 12, ... or CDC notation: 0-9, a-w;
  • Variant alleles: numerical 1s, 2s, 3s, ...
  • Double alleles: 4(+3) , (3+)2, ...; PCR failure: -; No data available: ?

Variant alleles correspond to alleles containing incomplete tandem repeat units, detected in some loci.
Double alleles consist of two alleles (two amplicons) simultaneously detected for a given locus. Double alleles detected in a single or >= 2 MIRU-VNTR loci indicates, respectively, the probable presence in the isolate sample of a clonal sub-population, or two independent strains.

Spoligo:

Enter the Spoligo data in one of these forms:
  • Binary: 43 digits 0 or 1
  • Binary, o/n: 43 character, o (absence of spacer) or n (presence of spacer)
  • Octaspoligotype: 15 digits ranging from 0-7
Note: Data submitted by users of the MIRU-VNTRplus service is NOT stored permanently except for new MIRU-VNTR patterns (expanding MLVA MtbC15-9 nomenclature) if explicitly agreed by the user (privacy statement). See our policy.